# ====================================================================
#
# Copyright 2025, PBL Netherlands Environmental Assessment Agency
# See the copyright notice at the end of this file.
#
# ====================================================================


# =============================================================================
# BioScore 3.0 Vegetation types model system configuration script 
#
# Description: This is the system configuration script which contains all the system pathways 
# Usuage: Use with BioScore HabitatsModel script 
# Purpose: Load and Store all pathways 
#
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# species_in_dir: subdirectory of base.dir, with subdirectories with .csv file species observations per plot
# plots: file with all plots derived from EVA-database. This database is used in combination with the files in species_in_dir to determine the absence values
# species_special: file with list of characteritstic/special group of species.
# binarized_SDMs:    folder including only the binarized SDM-predictions which should be used to fit and project the habitat model
# species_out_dir: subdirectory of base.dir, with subdirectories with all output files. Always name with the name of the script followed by date.

## Directories
species_in_dir <- "File.Path"
plots <- "File.Path"
species_special <- "File.Path"
binarized_SDMs <- "File.Path"
species_out_dir <- "File.Path"






# ====================================================================
#
# Copyright 2025, PBL Netherlands Environmental Assessment Agency
# 
# This source code of the BioScore model is owned by PBL Netherlands Environmental Assessment Agency. 
# It is not permitted to copy, redistribute, remix, transform, and build upon the material without written approval of PBL. 
# Permission for commercial purposes will not be granted. 
# This code is published to improve the transparency of the models used by PBL, 
# but without any warranty for fitness for any other purpose. 
# After approval of PBL to use the code, PBL will not provide any support.
#
# 
# ====================================================================

