# ====================================================================
#
# Copyright 2025, PBL Netherlands Environmental Assessment Agency
# See the copyright notice at the end of this file.
#
# ====================================================================


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## system settings for PostProcessingSDMs.R

## AllMetrics_file: This is a metric file containing all the metrics from the fitted SDMs for all the species for which the SDMs were run. This file is generated in the core-model.
## LU_map: optional. Land use map that is used to mask unsuitable land uses from the range  maps
## species_out_dir: subdirectory of base.dir, in which all output files are stored. Always include the name of the script followed by date in the name of the output directory.
## SDM_predictions:  a folder containing all the range maps created per scenario as produces in the core-model.
## Realised_SpeciesRanges: a folder containing a raster file per species with the realised range derived from POWO and GIFT.
## Dispersal_data_file: a table containing per species the dispersal rates.

AllMetrics_file <- "File.Path"
LU_map <- "File.Path"
species_out_dir <- "File.Path"
SDM_predictions <- "File.Path"
Realised_SpeciesRanges <- "File.Path"
if(DispersalAssumption == "realistic dispersal"){
  Dispersal_data_file <- "File.Path"
}




# ====================================================================
#
# Copyright 2025, PBL Netherlands Environmental Assessment Agency
# 
# This source code of the BioScore model is owned by PBL Netherlands Environmental Assessment Agency. 
# It is not permitted to copy, redistribute, remix, transform, and build upon the material without written approval of PBL. 
# Permission for commercial purposes will not be granted. 
# This code is published to improve the transparency of the models used by PBL, 
# but without any warranty for fitness for any other purpose. 
# After approval of PBL to use the code, PBL will not provide any support.
#
# 
# ====================================================================

